Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers Recipe
Introduction
Enjoy a healthier twist on a classic treat with these Greek Yogurt Chocolate Chip Cookies. They feature melty chocolate centers and a tender crumb, all while packing protein and fiber for a guilt-free snack you can feel good about.

Ingredients
- ½ cup Greek yogurt (thick, full-fat)
- ¼ cup peanut butter (or butter)
- ¼ cup honey or maple syrup
- 1 egg
- 1 teaspoon vanilla extract
- 1 cup oat flour
- ½ teaspoon baking powder
- ¼ teaspoon salt
- ½ cup chocolate chips
Instructions
- Step 1: Preheat your oven to 350°F and line a large baking sheet with parchment paper to prevent sticking and help with easy cookie removal.
- Step 2: In a large bowl, whisk together the Greek yogurt, peanut butter, honey, egg, and vanilla extract until completely smooth and lump-free.
- Step 3: Sprinkle the oat flour, baking powder, and salt over the wet ingredients. Stir gently until just combined to avoid developing gluten and keep cookies tender.
- Step 4: Fold in the chocolate chips carefully with a spatula. Save a few chips to press on top of each cookie before baking for a professional look.
- Step 5: Drop rounded tablespoons of dough onto the prepared baking sheet about 2 inches apart. Bake for 10–12 minutes until the edges turn golden but the centers remain slightly soft and underbaked.
- Step 6: Let the cookies cool on the baking sheet for 5 minutes before transferring them to a wire rack to finish cooling—this helps keep them soft and prevents breaking.
Tips & Variations
- Use mini chocolate chips for more even distribution or regular-sized chips for gooey melty pockets.
- Substitute peanut butter with regular butter or sunflower seed butter if you have allergies.
- Add a pinch of cinnamon for a warm, snickerdoodle-inspired twist.
- Try folding in chopped nuts, dried cranberries, or coconut flakes for added texture and flavor.
- Chill the dough for 30 minutes if it feels too soft to handle before baking.
Storage
Store the cookies in an airtight container at room temperature for up to 4 days. For longer storage, freeze them in a sealed container for up to 3 months. To reheat, warm cookies briefly in the microwave for about 10 seconds to restore the melty texture.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I use low-fat Greek yogurt instead of full-fat?
Full-fat Greek yogurt is recommended to maintain the moist, tender texture of these cookies. Using low-fat versions may result in drier, crumbly cookies.
Can I make these cookies gluten-free?
Yes, these cookies are naturally gluten-free if you use certified gluten-free oat flour. Just be sure all your other ingredients are gluten-free as well.
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Healthy Greek Yogurt Chocolate Chip Cookies with Melty Centers Recipe
- Total Time: 22 minutes
- Yield: Approximately 12 cookies 1x
- Diet: Low Fat
Description
These Healthy Greek Yogurt Chocolate Chip Cookies combine moistness and protein-packed Greek yogurt with wholesome oat flour and natural sweeteners. They bake up soft with melty chocolate centers, delivering a guilt-free treat that balances nutrition and indulgence perfectly.
Ingredients
Wet Ingredients
- ½ cup full-fat Greek yogurt (e.g., Fage or Chobani)
- ¼ cup peanut butter (natural, well-stirred) or butter
- ¼ cup honey or maple syrup
- 1 large egg
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 cup oat flour (homemade by grinding rolled oats or pre-made)
- ½ teaspoon baking powder
- ¼ teaspoon salt
Add-ins
- ½ cup chocolate chips (regular or mini chocolate chips)
Instructions
- Prep Your Oven and Pan: Preheat your oven to 350°F (175°C). Line a large baking sheet with parchment paper to prevent sticking and ensure easy removal of the cookies.
- Mix Wet Ingredients: In a large bowl, vigorously whisk Greek yogurt, peanut butter, honey, egg, and vanilla extract until completely smooth and lump-free, about 2 minutes. This ensures a uniform batter for tender cookies.
- Add Dry Ingredients: Sprinkle oat flour, baking powder, and salt over the wet mixture. Gently stir until just combined, taking care not to overmix to keep the cookies tender and not tough.
- Fold in Chocolate Chips: Carefully fold in chocolate chips with a spatula, saving some to press on top of each cookie later for an attractive bakery-style finish.
- Bake to Perfection: Using a cookie scoop or tablespoon, drop rounded dough portions 2 inches apart on the baking sheet. Bake 10-12 minutes until the edges turn golden but the centers remain slightly soft to maintain melty centers. Let cookies cool on the pan for 5 minutes before transferring.
Notes
- Use full-fat Greek yogurt for best moisture and richness; low-fat versions lead to dry cookies.
- Do not overbake; cookies should look slightly underdone when removed from oven to keep centers gooey.
- If dough feels too soft to handle, chill for 30 minutes before baking.
- Press extra chocolate chips on top before baking for a professional, appealing look.
- Substitute peanut butter with butter or sunflower seed butter if allergic to peanuts.
- Make oat flour by processing rolled oats in a food processor for about 30 seconds if buying pre-made oat flour is unavailable.
- For extra flavor variations, add cinnamon, nuts, cocoa powder, or dried fruit as desired.
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Category: Dessert
- Method: Baking
- Cuisine: Greek-American
Keywords: healthy cookies, Greek yogurt cookies, chocolate chip cookies, oat flour cookies, low fat dessert, protein cookies, natural sweeteners

